CRP-DNA Complex
PRODORIC logo Release 8.9
Query Database - Brief Introduction

bullet Step 1 - Select Query Form

Select a query form from the menu or click on the image.
Query Image Transcription Factor / Protein Search Gene Search Transcription Factor Binding Site Search Regulon List / TFBSs Interactions Position Weight Matrix Search Expression Profile Search Promoter Search

The following forms and information contents are provided:
Form Information
Genes and Operons gene and operon structure, genomic context, codon usage, GC content
Proteins (Regulators) amino acid sequence, structural and functional information, interactions with other proteins and DNA binding sites
TF Binding Sites information about DNA bindings sites of transcriptional regulators, sequence, genomic context, mode of interaction
Regulon List summary of all binding sites of one transcriptional regulator and corresponding regulated genes
Weight Matrices position weight matrices (PWMs) based on a set of aligned binding sites, sequence logos
Promoters architecture of promoters
Expression Profiles expression profiles based on published transcriptomics and protomics experiments
Statistics statistics of the current database content
Brief Introduction this help screen

bullet Step 2 - Enter Term(s) and Press Query Button

Gene Form

Click on Reset to clear the web form.
Combined searches and the use of wild cards are possible:
  • * matches any string of zero or more characters
  • _ (underscore) matches any single character

bullet Step 3 - Choose from Result List

Click on the link of interest of the result list.
Gene Result List